Set up repo for Rust problems
This commit is contained in:
Fizzizist
parent
389773d411
commit
287d599e82
2
.gitignore
vendored
2
.gitignore
vendored
@ -1,2 +1,4 @@
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.venv
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*.txt
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rust/*.txt
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rust/target/*
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@ -1,50 +0,0 @@
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#!/usr/bin/python
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#Solution to REVP Rosalind problem - Locating Restriction Sites
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#Author: Peter Vlasveld
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#read in file and get contents
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f1 = open("rosalind_revp.txt")
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content = f1.readlines()
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f1.close()
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#get DNA string from content
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DNAStr = ""
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for i in xrange(1,len(content)):
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DNAStr += content[i].strip()
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#function to return the DNA compliment
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def DNACompliment(stri):
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rev = stri[::-1]
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revList = list(rev)
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for i in xrange(0, len(revList)):
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if revList[i] == "A":
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revList[i] = "T"
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elif revList[i] == "T":
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revList[i] = "A"
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elif revList[i] == "G":
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revList[i] = "C"
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elif revList[i] == "C":
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revList[i] = "G"
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revCompStr = "".join(revList)
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return revCompStr
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#loop through DNA string
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indexes = []
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lengths = []
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for j in xrange(0, len(DNAStr)-3):
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#evaluating 4 to 12 character sets, taking the reverse compliment and comparing,
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#if a match is found record the index and length and then break
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for k in xrange(4, 13):
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comp = DNACompliment(DNAStr[j:j+k])
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if comp == DNAStr[j:j+k]:
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indexes.extend([j+1])
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lengths.extend([k])
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print(DNAStr[j:j+k])
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break
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#output results to a file
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f2 = open("output.txt","w")
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for i in xrange(0,len(indexes)):
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f2.write(str(indexes[i]) + " " + str(lengths[i]) + "\n")
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f2.close()
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244
rust/Cargo.lock
generated
Normal file
244
rust/Cargo.lock
generated
Normal file
@ -0,0 +1,244 @@
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# This file is automatically @generated by Cargo.
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# It is not intended for manual editing.
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version = 4
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[[package]]
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name = "anstream"
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version = "0.6.18"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "8acc5369981196006228e28809f761875c0327210a891e941f4c683b3a99529b"
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dependencies = [
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"anstyle",
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"anstyle-parse",
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"anstyle-query",
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"anstyle-wincon",
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"colorchoice",
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"is_terminal_polyfill",
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"utf8parse",
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]
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[[package]]
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name = "anstyle"
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version = "1.0.10"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "55cc3b69f167a1ef2e161439aa98aed94e6028e5f9a59be9a6ffb47aef1651f9"
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[[package]]
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name = "anstyle-parse"
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version = "0.2.6"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "3b2d16507662817a6a20a9ea92df6652ee4f94f914589377d69f3b21bc5798a9"
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dependencies = [
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"utf8parse",
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]
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[[package]]
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name = "anstyle-query"
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version = "1.1.2"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "79947af37f4177cfead1110013d678905c37501914fba0efea834c3fe9a8d60c"
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dependencies = [
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"windows-sys",
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]
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[[package]]
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name = "anstyle-wincon"
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version = "3.0.7"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "ca3534e77181a9cc07539ad51f2141fe32f6c3ffd4df76db8ad92346b003ae4e"
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dependencies = [
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"anstyle",
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"once_cell",
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"windows-sys",
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]
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[[package]]
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name = "clap"
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version = "4.5.30"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "92b7b18d71fad5313a1e320fa9897994228ce274b60faa4d694fe0ea89cd9e6d"
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dependencies = [
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"clap_builder",
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"clap_derive",
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]
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[[package]]
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name = "clap_builder"
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version = "4.5.30"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "a35db2071778a7344791a4fb4f95308b5673d219dee3ae348b86642574ecc90c"
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dependencies = [
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"anstream",
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"anstyle",
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"clap_lex",
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"strsim",
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]
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[[package]]
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name = "clap_derive"
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version = "4.5.28"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "bf4ced95c6f4a675af3da73304b9ac4ed991640c36374e4b46795c49e17cf1ed"
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dependencies = [
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"heck",
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"proc-macro2",
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"quote",
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"syn",
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]
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[[package]]
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name = "clap_lex"
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version = "0.7.4"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "f46ad14479a25103f283c0f10005961cf086d8dc42205bb44c46ac563475dca6"
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[[package]]
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name = "colorchoice"
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version = "1.0.3"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "5b63caa9aa9397e2d9480a9b13673856c78d8ac123288526c37d7839f2a86990"
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[[package]]
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name = "heck"
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version = "0.5.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea"
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[[package]]
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name = "is_terminal_polyfill"
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version = "1.70.1"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "7943c866cc5cd64cbc25b2e01621d07fa8eb2a1a23160ee81ce38704e97b8ecf"
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[[package]]
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name = "once_cell"
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version = "1.20.3"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "945462a4b81e43c4e3ba96bd7b49d834c6f61198356aa858733bc4acf3cbe62e"
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[[package]]
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name = "proc-macro2"
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version = "1.0.93"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "60946a68e5f9d28b0dc1c21bb8a97ee7d018a8b322fa57838ba31cc878e22d99"
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dependencies = [
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"unicode-ident",
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]
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[[package]]
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name = "quote"
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version = "1.0.38"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "0e4dccaaaf89514f546c693ddc140f729f958c247918a13380cccc6078391acc"
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dependencies = [
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"proc-macro2",
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]
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[[package]]
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name = "rust"
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version = "0.1.0"
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dependencies = [
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"clap",
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]
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[[package]]
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name = "strsim"
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version = "0.11.1"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "7da8b5736845d9f2fcb837ea5d9e2628564b3b043a70948a3f0b778838c5fb4f"
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[[package]]
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name = "syn"
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version = "2.0.98"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "36147f1a48ae0ec2b5b3bc5b537d267457555a10dc06f3dbc8cb11ba3006d3b1"
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dependencies = [
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"proc-macro2",
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"quote",
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"unicode-ident",
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]
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[[package]]
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name = "unicode-ident"
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version = "1.0.16"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "a210d160f08b701c8721ba1c726c11662f877ea6b7094007e1ca9a1041945034"
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[[package]]
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name = "utf8parse"
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version = "0.2.2"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821"
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[[package]]
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name = "windows-sys"
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version = "0.59.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "1e38bc4d79ed67fd075bcc251a1c39b32a1776bbe92e5bef1f0bf1f8c531853b"
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dependencies = [
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"windows-targets",
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]
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[[package]]
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name = "windows-targets"
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version = "0.52.6"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "9b724f72796e036ab90c1021d4780d4d3d648aca59e491e6b98e725b84e99973"
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dependencies = [
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"windows_aarch64_gnullvm",
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"windows_aarch64_msvc",
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"windows_i686_gnu",
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"windows_i686_gnullvm",
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"windows_i686_msvc",
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"windows_x86_64_gnu",
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"windows_x86_64_gnullvm",
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"windows_x86_64_msvc",
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]
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[[package]]
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name = "windows_aarch64_gnullvm"
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version = "0.52.6"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3"
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[[package]]
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name = "windows_aarch64_msvc"
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version = "0.52.6"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469"
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[[package]]
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name = "windows_i686_gnu"
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version = "0.52.6"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "8e9b5ad5ab802e97eb8e295ac6720e509ee4c243f69d781394014ebfe8bbfa0b"
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[[package]]
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name = "windows_i686_gnullvm"
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version = "0.52.6"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66"
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[[package]]
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name = "windows_i686_msvc"
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version = "0.52.6"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66"
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[[package]]
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name = "windows_x86_64_gnu"
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version = "0.52.6"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78"
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[[package]]
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name = "windows_x86_64_gnullvm"
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version = "0.52.6"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d"
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[[package]]
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name = "windows_x86_64_msvc"
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version = "0.52.6"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
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7
rust/Cargo.toml
Normal file
7
rust/Cargo.toml
Normal file
@ -0,0 +1,7 @@
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[package]
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name = "rust"
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version = "0.1.0"
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edition = "2021"
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[dependencies]
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clap = { version = "4.5.30", features = ["derive"] }
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32
rust/src/main.rs
Normal file
32
rust/src/main.rs
Normal file
@ -0,0 +1,32 @@
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mod solutions;
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mod utils;
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use clap::Parser;
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use utils::run_solution;
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#[derive(clap::ValueEnum, Clone, Debug)]
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enum Problem {
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REVP,
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}
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#[derive(Parser, Debug)]
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#[command(
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name = "Rosalind Problems",
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version = "v0.0.0",
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author = "Peter Vlasveld <peter@vlasveld.info>",
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about = "Solves Problems from rosalind.info"
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)]
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struct Args {
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#[arg(short, long)]
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problem: Problem,
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#[arg(short, long)]
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input_file: String,
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#[arg(short, long, default_value = "output.txt")]
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output_file: String,
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}
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fn main() {
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let args = Args::parse();
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run_solution(args.problem, &args.input_file, &args.output_file);
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}
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2
rust/src/solutions/mod.rs
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2
rust/src/solutions/mod.rs
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mod revp;
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pub use revp::revp;
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3
rust/src/solutions/revp.rs
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3
rust/src/solutions/revp.rs
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pub fn revp(file_content: String) -> String {
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"placeholder".to_string()
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}
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20
rust/src/utils.rs
Normal file
20
rust/src/utils.rs
Normal file
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use crate::{solutions, Problem};
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use std::{fs, io};
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pub fn run_solution(problem: Problem, in_file: &String, out_file: &String) {
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// parse the input file into a string
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let solution: io::Result<String> = match fs::read_to_string(in_file) {
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Ok(content) => match problem {
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Problem::REVP => Ok(solutions::revp(content)),
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},
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Err(e) => Err(e),
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};
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match solution {
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Ok(out_content) => match fs::write(out_file, &out_content) {
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Ok(_) => println!("{:?}", out_content),
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Err(e) => println!("Error writing to output file: {e}"),
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},
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Err(e) => println!("An error occured reading the input file: {e}"),
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};
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}
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Block a user